SRX026268
GSM575229: HNF4A ChIP-seq in differentiated cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HNF4A

Cell type

Cell type Class
Digestive tract
Cell type
Caco-2
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
differentiated Caco-2 cells
cell type
human intestinal cell line
cell line
Caco-2
chip antibody
HNF4A (Santa Cruz 8987 and Santa Cruz 6556)

Sequenced DNA Library

library_name
GSM575229: HNF4A ChIP-seq in differentiated cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13233488
Reads aligned (%)
93.8
Duplicates removed (%)
17.9
Number of peaks
23206 (qval < 1E-05)

hg19

Number of total reads
13233488
Reads aligned (%)
93.2
Duplicates removed (%)
19.0
Number of peaks
23282 (qval < 1E-05)

Base call quality data from DBCLS SRA