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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CDX2
wikigenes
PDBj
CellType: Caco-2
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX026263
GSM575224: CDX2 ChIP-seq in proliferating cells
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CDX2
Cell type
Cell type Class
Digestive tract
Cell type
Caco-2
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
proliferating Caco-2 cells
cell type
human intestinal cell line
cell line
Caco-2
chip antibody
CDX2 (Bethyl Labs BL3194)
Sequenced DNA Library
library_name
GSM575224: CDX2 ChIP-seq in proliferating cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
14142257
Reads aligned (%)
97.7
Duplicates removed (%)
10.6
Number of peaks
2280 (qval < 1E-05)
hg19
Number of total reads
14142257
Reads aligned (%)
96.9
Duplicates removed (%)
11.8
Number of peaks
2326 (qval < 1E-05)
Base call quality data from
DBCLS SRA