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Install and launch IGV before selecting data to visualize
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Trl
wikigenes
PDBj
CellType: Kc
ATCC
MeSH
RIKEN BRC
SRX025489
GSM570054: Trl-D2 ChIPSeq 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Trl
Cell type
Cell type Class
Cell line
Cell type
Kc
Source
e/se
Developmental Stage
dorsal closure stage
Attributes by original data submitter
Sample
source_name
Kc
developmental stage
Kc
fraction
ChIP
antibody name
KW3-Trl-D2
manufacturer
White Lab/Aviva
Sequenced DNA Library
library_name
GSM570054: Trl-D2_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm3
Number of total reads
4744819
Reads aligned (%)
85.7
Duplicates removed (%)
51.9
Number of peaks
5089 (qval < 1E-05)
dm6
Number of total reads
4744819
Reads aligned (%)
85.5
Duplicates removed (%)
53.1
Number of peaks
4881 (qval < 1E-05)
Base call quality data from
DBCLS SRA