SRX025480
GSM570045: kni ChIPSeq 1, 2 and 3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
kni

Cell type

Cell type Class
Embryo
Cell type
8-16h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E8-16h
developmental stage
E8-16h
fraction
ChIP
antibody name
KW3-kni-D2
manufacturer
White Lab/Aviva

Sequenced DNA Library

library_name
GSM570045: kni_ChIPSeq_1, 2 and 3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm3

Number of total reads
55648600
Reads aligned (%)
96.8
Duplicates removed (%)
61.6
Number of peaks
2765 (qval < 1E-05)

dm6

Number of total reads
55648600
Reads aligned (%)
96.1
Duplicates removed (%)
65.0
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA