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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Pcl
wikigenes
PDBj
CellType: 0-8h embryos
ATCC
MeSH
RIKEN BRC
SRX025472
GSM569800: Pcl ChIPSeq 1, 2 and 3
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Pcl
Cell type
Cell type Class
Embryo
Cell type
0-8h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
E0-8h
developmental stage
E0-8h
fraction
ChIP
antibody name
KW4-Pcl-D2
manufacturer
White Lab/Aviva
Sequenced DNA Library
library_name
GSM569800: Pcl_ChIPSeq_1, 2 and 3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
51060030
Reads aligned (%)
81.8
Duplicates removed (%)
78.4
Number of peaks
4849 (qval < 1E-05)
dm3
Number of total reads
51060030
Reads aligned (%)
82.8
Duplicates removed (%)
72.0
Number of peaks
8821 (qval < 1E-05)
Base call quality data from
DBCLS SRA