Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Pcl

Cell type

Cell type Class
Embryo
Cell type
0-8h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E0-8h
developmental stage
E0-8h
fraction
ChIP
antibody name
KW4-Pcl-D2
manufacturer
White Lab/Aviva

Sequenced DNA Library

library_name
GSM569800: Pcl_ChIPSeq_1, 2 and 3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

dm3

Number of total reads
51060030
Reads aligned (%)
23.2
Duplicates removed (%)
72.0
Number of peaks
8821 (qval < 1E-05)

dm6

Number of total reads
51060030
Reads aligned (%)
17.7
Duplicates removed (%)
78.4
Number of peaks
4849 (qval < 1E-05)

Base call quality data from DBCLS SRA