SRX025470
GSM569798: 10T E16-24h GFP ChIPSeq 1 and 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GFP

Cell type

Cell type Class
Embryo
Cell type
16-24h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
10T-E16-24h
developmental stage
10T-E16-24h
fraction
ChIP
antibody name
NWG-GFP
manufacturer
White Lab/Chemicon

Sequenced DNA Library

library_name
GSM569798: 10T_E16-24h_GFP_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
15405456
Reads aligned (%)
85.9
Duplicates removed (%)
64.2
Number of peaks
3341 (qval < 1E-05)

dm3

Number of total reads
15405456
Reads aligned (%)
88.3
Duplicates removed (%)
53.0
Number of peaks
10848 (qval < 1E-05)

Base call quality data from DBCLS SRA