Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: hkb
wikigenes
PDBj
CellType: 8-16h embryos
ATCC
MeSH
RIKEN BRC
SRX025464
GSM569793: hkb ChIPSeq 1 and 2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
hkb
Cell type
Cell type Class
Embryo
Cell type
8-16h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
E8-16h
developmental stage
E8-16h
fraction
ChIP
antibody name
KW3-hkb-D1
manufacturer
White Lab/Aviva
Sequenced DNA Library
library_name
GSM569793: hkb_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
31022681
Reads aligned (%)
98.3
Duplicates removed (%)
42.1
Number of peaks
2788 (qval < 1E-05)
dm3
Number of total reads
31022681
Reads aligned (%)
98.6
Duplicates removed (%)
40.5
Number of peaks
0 (qval < 1E-05)
Base call quality data from
DBCLS SRA