Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
hkb

Cell type

Cell type Class
Embryo
Cell type
8-16h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E8-16h
developmental stage
E8-16h
fraction
ChIP
antibody name
KW3-hkb-D1
manufacturer
White Lab/Aviva

Sequenced DNA Library

library_name
GSM569793: hkb_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

dm3

Number of total reads
31022681
Reads aligned (%)
58.6
Duplicates removed (%)
40.5
Number of peaks
0 (qval < 1E-05)

dm6

Number of total reads
31022681
Reads aligned (%)
56.9
Duplicates removed (%)
42.1
Number of peaks
2788 (qval < 1E-05)

Base call quality data from DBCLS SRA