SRX024354
GSM569077: ChIP-Seq for H3K9me3 in MDER 10T cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Others
Cell type
Fibroblasts
NA
NA

Attributes by original data submitter

Sample

source_name
MDER cells
chip antibody
H3K9me3
antibody catalog number
AB8898
cell type
fibroblast
antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM569077: ChIP-Seq for H3K9me3 in MDER 10T cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
3917891
Reads aligned (%)
85.3
Duplicates removed (%)
11.6
Number of peaks
161 (qval < 1E-05)

mm9

Number of total reads
3917891
Reads aligned (%)
85.1
Duplicates removed (%)
12.1
Number of peaks
190 (qval < 1E-05)

Base call quality data from DBCLS SRA