SRX023718
GSM566970: mm9-Bcell-WT-LPS-dex-ASH2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ash2l

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse B cells
strain
Cd19-cre X Paxip flox/flox
age
6-14 weeks
tissue
spleen
cell type
B cells
genome/variation
wild type
antibody
ASH2
treatment group
dextran

Sequenced DNA Library

library_name
GSM566970: mm9-Bcell-WT-LPS-dex-ASH2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22504689
Reads aligned (%)
62.0
Duplicates removed (%)
13.9
Number of peaks
4006 (qval < 1E-05)

mm9

Number of total reads
22504689
Reads aligned (%)
61.9
Duplicates removed (%)
14.0
Number of peaks
3973 (qval < 1E-05)

Base call quality data from DBCLS SRA