SRX023703
GSM566955: mm9-Bcell-KO-LPS-dex3-H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse B cells
strain
Cd19-cre X Paxip flox/flox
age
6-14 weeks
tissue
spleen
cell type
B cells
genome/variation
PTIP-knockout
antibody
H3K4me3
treatment group
dextran

Sequenced DNA Library

library_name
GSM566955: mm9-Bcell-KO-LPS-dex3-H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22093207
Reads aligned (%)
66.0
Duplicates removed (%)
42.9
Number of peaks
34882 (qval < 1E-05)

mm9

Number of total reads
22093207
Reads aligned (%)
66.0
Duplicates removed (%)
42.9
Number of peaks
34739 (qval < 1E-05)

Base call quality data from DBCLS SRA