SRX023651
GSM566157: BAP18-GFP HeLa rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
C17orf49

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Human cervical carcinoma cell line
cell line
HeLa Kyoto cell line
sample type
Antibody GFP Abcam (ab290-050); HeLa cells stably transfected with BAP18-GFP BAC
antibody
anti-GFP
antibody manufacturer
Abcam
transfection
BAP18-GFP BAC

Sequenced DNA Library

library_name
GSM566157: BAP18-GFP_HeLa rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
14538446
Reads aligned (%)
93.6
Duplicates removed (%)
17.5
Number of peaks
2389 (qval < 1E-05)

hg38

Number of total reads
14538446
Reads aligned (%)
94.1
Duplicates removed (%)
16.7
Number of peaks
2333 (qval < 1E-05)

Base call quality data from DBCLS SRA