SRX023215
GSM558677: input DNA

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
GIST48
NA
NA

Attributes by original data submitter

Sample

source_name
GIST48 Cells, input
cell line
GIST
fraction
input control
chip antibody
none

Sequenced DNA Library

library_name
GSM558677: input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28559511
Reads aligned (%)
62.8
Duplicates removed (%)
1.7
Number of peaks
672 (qval < 1E-05)

hg19

Number of total reads
28559511
Reads aligned (%)
62.2
Duplicates removed (%)
3.2
Number of peaks
792 (qval < 1E-05)

Base call quality data from DBCLS SRA