Antigen

Antigen Class

Histone

Antigen

H3K4me1

Cell type

Cell type Class

Neural

Cell type

Cerebellum

MeSH Description

The part of brain that lies behind the BRAIN STEM in the posterior base of skull (CRANIAL FOSSA, POSTERIOR). It is also known as the "little brain" with convolutions similar to those of CEREBRAL CORTEX, inner white matter, and deep cerebellar nuclei. Its function is to coordinate voluntary movements, maintain balance, and learn motor skills.

Sample

source_name

H3K4me1.rep2.s_2

developmental stage

P5

tissue type

4 P5 cerebella (pooled)

genotype

Atoh1FLAG/FLAG

sequencing protocol

single-end, 37-mer sequencing

chip antibody

Histone H3 (mono methyl K4)

antibody manufacturer

Abcam

antibody catalog number

AB8895

Sequenced DNA Library

library_name

GSM549939: H3K4me1.rep2.s_2

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

18577508

Reads aligned (%)

73.7

Duplicates removed (%)

5.3

Number of peaks

10568 (qval < 1E-05)

mm9

Number of total reads

18577508

Reads aligned (%)

73.7

Duplicates removed (%)

5.3

Number of peaks

10552 (qval < 1E-05)