Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TDRD3

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7 cells
cell type
human breast cancer cell
cell line
MCF7
chip antibody
TX516 (polyclonal anti TDRD3)

Sequenced DNA Library

library_name
GSM560884: TDRD3 ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
42858081
Reads aligned (%)
31.9
Duplicates removed (%)
58.5
Number of peaks
1492 (qval < 1E-05)

hg38

Number of total reads
42858081
Reads aligned (%)
33.5
Duplicates removed (%)
56.7
Number of peaks
1206 (qval < 1E-05)

Base call quality data from DBCLS SRA