SRX022699
GSM560352: ChipSeq for CTCF

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
Mouse embryonic fibroblasts
chip antibody
CTCF
antibody catalog number
Upstate 07-729
antibody lot number
DAM1682158
strain
C57BL/6-129
cell type
MEF

Sequenced DNA Library

library_name
GSM560352: ChipSeq for CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16850012
Reads aligned (%)
37.0
Duplicates removed (%)
17.5
Number of peaks
18179 (qval < 1E-05)

mm9

Number of total reads
16850012
Reads aligned (%)
36.9
Duplicates removed (%)
17.8
Number of peaks
18106 (qval < 1E-05)

Base call quality data from DBCLS SRA