SRX022582
GSM353656: tissue PolII

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Prostate
Cell type
Prostate cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
tissue - metastatic prostate cancer tissue - Chromatin IP against PolII

Sequenced DNA Library

library_name
GSM353656: tissue_PolII
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35595123
Reads aligned (%)
48.7
Duplicates removed (%)
5.5
Number of peaks
2368 (qval < 1E-05)

hg19

Number of total reads
35595123
Reads aligned (%)
48.2
Duplicates removed (%)
6.5
Number of peaks
2539 (qval < 1E-05)

Base call quality data from DBCLS SRA