SRX022556
GSM353622: VCaP regular medium Pan H3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP - regular medium - Chromatin IP against Pan-H3

Sequenced DNA Library

library_name
GSM353622: VCaP_regular_medium_Pan_H3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17559890
Reads aligned (%)
74.1
Duplicates removed (%)
3.0
Number of peaks
858 (qval < 1E-05)

hg19

Number of total reads
17559890
Reads aligned (%)
73.5
Duplicates removed (%)
4.0
Number of peaks
1025 (qval < 1E-05)

Base call quality data from DBCLS SRA