SRX022553
GSM353604: VCaP R1881 H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP - R1881 - Chromatin IP against H3K4me3

Sequenced DNA Library

library_name
GSM353604: VCaP_R1881_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
31393492
Reads aligned (%)
40.8
Duplicates removed (%)
4.2
Number of peaks
3244 (qval < 1E-05)

hg19

Number of total reads
31393492
Reads aligned (%)
40.3
Duplicates removed (%)
5.1
Number of peaks
3138 (qval < 1E-05)

Base call quality data from DBCLS SRA