SRX022542
GSM558118: mm8-Bcell-KO-dex-H3K4me2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse B cells
strain
Cd19-cre X Paxip flox/flox
age
6-14 weeks
tissue
spleen
cell type
B cells
genome/variation
PTIP-knockout
antibody
H3K4me2
treatment group
dextran

Sequenced DNA Library

library_name
GSM558118: mm8-Bcell-KO-dex-H3K4me2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
7630525
Reads aligned (%)
58.5
Duplicates removed (%)
19.6
Number of peaks
15170 (qval < 1E-05)

mm9

Number of total reads
7630525
Reads aligned (%)
58.4
Duplicates removed (%)
19.7
Number of peaks
15183 (qval < 1E-05)

Base call quality data from DBCLS SRA