SRX022495
GSM559653: Midbrain p300 ChIP-seq 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse embryonic day 11.5 (e11.5) midbrain
strain
CD-1
gender
Mixed male / female
developmental stage
embryonic day 11.5 (e11.5)
tissue
midbrain

Sequenced DNA Library

library_name
GSM559653: Midbrain_p300_ChIP-seq_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16721092
Reads aligned (%)
45.9
Duplicates removed (%)
13.9
Number of peaks
394 (qval < 1E-05)

mm9

Number of total reads
16721092
Reads aligned (%)
45.7
Duplicates removed (%)
14.1
Number of peaks
460 (qval < 1E-05)

Base call quality data from DBCLS SRA