SRX022484
GSM558909: P300 [ChIP-seq]

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ep300

Cell type

Cell type Class
Cardiovascular
Cell type
HL-1
NA
NA

Attributes by original data submitter

Sample

source_name
HL-1 cells
strain
C57BL/6J
cell line
HL-1 cardiac muscle cell line
protocol
ChIP against P300
chip antibody
P300 antibody (Santa Cruz, catalog# sc-585x, lot# c0509)

Sequenced DNA Library

library_name
GSM558909: P300 [ChIP-seq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25305717
Reads aligned (%)
75.6
Duplicates removed (%)
13.5
Number of peaks
2368 (qval < 1E-05)

mm9

Number of total reads
25305717
Reads aligned (%)
75.4
Duplicates removed (%)
13.6
Number of peaks
2379 (qval < 1E-05)

Base call quality data from DBCLS SRA