SRX022435
GSM558474: H4K20me1 HeLa M ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H4K20me1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa cells
cell line
HeLa cells
antibody
H4K20me1
antibody catalog
ab9051
antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM558474: H4K20me1_HeLa_M_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16361110
Reads aligned (%)
89.2
Duplicates removed (%)
3.8
Number of peaks
370 (qval < 1E-05)

hg19

Number of total reads
16361110
Reads aligned (%)
88.7
Duplicates removed (%)
4.4
Number of peaks
365 (qval < 1E-05)

Base call quality data from DBCLS SRA