SRX022431
GSM558468: H3K4me2 HeLa ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa cells
cell line
HeLa cells
antibody
H3K4me2
antibody catalog
ab7766
antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM558468: H3K4me2_HeLa_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
2029718
Reads aligned (%)
84.4
Duplicates removed (%)
1.9
Number of peaks
5074 (qval < 1E-05)

hg19

Number of total reads
2029718
Reads aligned (%)
84.0
Duplicates removed (%)
2.0
Number of peaks
5046 (qval < 1E-05)

Base call quality data from DBCLS SRA