SRX022395
GSM558635: GM10861 unstimulated rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
VDR

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines

Attributes by original data submitter

Sample

source_name
lymphoblastoid, GM10861, unstimulated
biomaterial_provider
GM10861
cell line
GM10861
cell type
lymphoblastoid
treatment
unstimulated
antibody
anti-VDR
antibody name
VDR (C-20)
antibody vendor
Santa Cruz Biotechnology
antibody catalog number
sc-1008
antibody lot number
B1809

Sequenced DNA Library

library_name
GSM558635: GM10861_unstimulated_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
10145026
Reads aligned (%)
91.4
Duplicates removed (%)
5.7
Number of peaks
3461 (qval < 1E-05)

hg38

Number of total reads
10145026
Reads aligned (%)
95.0
Duplicates removed (%)
6.5
Number of peaks
3353 (qval < 1E-05)

Base call quality data from DBCLS SRA