SRX021878
GSM546524: RAG1KO-EBF-ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ebf1

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
RAG1-/- pro-B cell
strain
C57BL/6
cell type
pro-B cell
chip antibody
EBF (H00001879-M01), 08344-1C2
transgenes
none
genetic background
RAG1-/-

Sequenced DNA Library

library_name
GSM546524: RAG1KO-EBF-ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6508111
Reads aligned (%)
56.0
Duplicates removed (%)
7.7
Number of peaks
1061 (qval < 1E-05)

mm9

Number of total reads
6508111
Reads aligned (%)
55.9
Duplicates removed (%)
8.2
Number of peaks
1069 (qval < 1E-05)

Base call quality data from DBCLS SRA