SRX021817
GSM552241: HPC7 Runx1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived haematopoietic progenitor
NA
NA

Attributes by original data submitter

Sample

source_name
HPC-7 Cell Line
cell type
Early haematopoietic cell line derived from ES cells

Sequenced DNA Library

library_name
GSM552241: HPC7_Runx1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
5731678
Reads aligned (%)
90.2
Duplicates removed (%)
9.9
Number of peaks
2011 (qval < 1E-05)

mm9

Number of total reads
5731678
Reads aligned (%)
90.0
Duplicates removed (%)
10.3
Number of peaks
2017 (qval < 1E-05)

Base call quality data from DBCLS SRA