SRX021068
GSM545201: H9 IgG

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
Embyonic stem cells
chip antibody
IgG
antibody manufacturer
Upstate
antibody catalog number
12-370
cell type
H9

Sequenced DNA Library

library_name
GSM545201: H9 IgG
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10084362
Reads aligned (%)
50.1
Duplicates removed (%)
4.8
Number of peaks
75 (qval < 1E-05)

hg19

Number of total reads
10084362
Reads aligned (%)
49.7
Duplicates removed (%)
5.2
Number of peaks
71 (qval < 1E-05)

Base call quality data from DBCLS SRA