SRX020956
GSM544724: 3T3-L1 24hr Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
24hr_Input
cell line
3T3-L1
developmental stage
24 hr after inducing differentiation
chip antibody
--

Sequenced DNA Library

library_name
GSM544724: 3T3-L1_24hr_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6298144
Reads aligned (%)
95.5
Duplicates removed (%)
21.2
Number of peaks
236 (qval < 1E-05)

mm9

Number of total reads
6298144
Reads aligned (%)
95.3
Duplicates removed (%)
21.5
Number of peaks
252 (qval < 1E-05)

Base call quality data from DBCLS SRA