SRX020955
GSM544723: 3T3-L1 0hr Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
0hr_Input
cell line
3T3-L1
developmental stage
undifferentiated
chip antibody
--

Sequenced DNA Library

library_name
GSM544723: 3T3-L1_0hr_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
7534091
Reads aligned (%)
87.3
Duplicates removed (%)
11.9
Number of peaks
187 (qval < 1E-05)

mm9

Number of total reads
7534091
Reads aligned (%)
87.1
Duplicates removed (%)
12.0
Number of peaks
230 (qval < 1E-05)

Base call quality data from DBCLS SRA