SRX020940
GSM353634: LnCaP regular medium H3K4me1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LnCaP - regular medium - Chromatin IP against H3K4me1

Sequenced DNA Library

library_name
GSM353634: LnCaP_regular_medium_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8484739
Reads aligned (%)
77.1
Duplicates removed (%)
8.4
Number of peaks
234 (qval < 1E-05)

hg19

Number of total reads
8484739
Reads aligned (%)
76.8
Duplicates removed (%)
8.5
Number of peaks
241 (qval < 1E-05)

Base call quality data from DBCLS SRA