SRX020926
GSM353612: LnCaP R1881 H3K27me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LnCaP - R1881 - Chromatin IP against H3K27me3

Sequenced DNA Library

library_name
GSM353612: LnCaP_R1881_H3K27me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
6586363
Reads aligned (%)
74.4
Duplicates removed (%)
12.1
Number of peaks
55 (qval < 1E-05)

hg19

Number of total reads
6586363
Reads aligned (%)
73.8
Duplicates removed (%)
12.7
Number of peaks
55 (qval < 1E-05)

Base call quality data from DBCLS SRA