SRX020925
GSM353611: LnCaP Ethl H3K27me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LnCaP - Ethanol - Chromatin IP against H3K27me3

Sequenced DNA Library

library_name
GSM353611: LnCaP_Ethl_H3K27me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7812892
Reads aligned (%)
67.0
Duplicates removed (%)
24.1
Number of peaks
47 (qval < 1E-05)

hg19

Number of total reads
7812892
Reads aligned (%)
66.5
Duplicates removed (%)
24.8
Number of peaks
98 (qval < 1E-05)

Base call quality data from DBCLS SRA