SRX020920
GSM353606: VCaP R1881 H3K27me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP - R1881 - Chromatin IP against H3K27me3

Sequenced DNA Library

library_name
GSM353606: VCaP_R1881_H3K27me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8993745
Reads aligned (%)
68.2
Duplicates removed (%)
4.3
Number of peaks
90 (qval < 1E-05)

hg19

Number of total reads
8993745
Reads aligned (%)
67.6
Duplicates removed (%)
5.0
Number of peaks
96 (qval < 1E-05)

Base call quality data from DBCLS SRA