Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Stat3

Cell type

Cell type Class
Blood
Cell type
Th17 Cells
MeSH Description
A subset of helper-effector T-lymphocytes which synthesize and secrete INTERLEUKINS IL-17; IL-17F; and IL-22. These cytokines are involved in host defenses and tissue inflammation in autoimmune diseases.

Attributes by original data submitter

Sample

source_name
in vitro polarized Th17 T cells
strain
Stat3fl/fl FoxP3-GFP<STAT3 wild type>
cell type
WT-Th17 polazied T cells from naive
passages
mouse primary T cells cultured in vitro for 3 days and restimulated with IL6
chip antibody
Phospho-STAT3(Ser727)
antibody manufacturer
Cell Signaling
antibody catalog number
9134

Sequenced DNA Library

library_name
GSM540722: Stat3fl/fl FoxP3-GFP<STAT3 wild type>, STAT3-ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
18052106
Reads aligned (%)
84.5
Duplicates removed (%)
19.4
Number of peaks
14109 (qval < 1E-05)

mm9

Number of total reads
18052106
Reads aligned (%)
84.4
Duplicates removed (%)
19.5
Number of peaks
14191 (qval < 1E-05)

Base call quality data from DBCLS SRA