Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rxra

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
RFWT_234
strain
C57 BL/6
tissue type
liver
genotype/variation
wildtype
gender
female
antibody
RXRa (D-20)
antibody manufacturer
Santa Cruz Biotechnology
antibody catalog number
sc-553

Sequenced DNA Library

library_name
GSM541300: RFWT_234
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
33941763
Reads aligned (%)
83.0
Duplicates removed (%)
46.9
Number of peaks
49631 (qval < 1E-05)

mm9

Number of total reads
33941763
Reads aligned (%)
82.9
Duplicates removed (%)
47.0
Number of peaks
49693 (qval < 1E-05)

Base call quality data from DBCLS SRA