Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rxra

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
RFKO_233
strain
C57 BL/6
tissue type
liver
genotype/variation
hs-RXRa-del-exon4-/-
gender
female
antibody
RXRa (D-20)
antibody manufacturer
Santa Cruz Biotechnology
antibody catalog number
sc-553

Sequenced DNA Library

library_name
GSM541294: RFKO_233
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
37606661
Reads aligned (%)
81.9
Duplicates removed (%)
64.4
Number of peaks
20467 (qval < 1E-05)

mm9

Number of total reads
37606661
Reads aligned (%)
81.8
Duplicates removed (%)
64.5
Number of peaks
20463 (qval < 1E-05)

Base call quality data from DBCLS SRA