SRX019933
GSM529979: MDEC DMSO-preexposed rep2 [ChIP-seq]

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Breast
Cell type
Mammosphere
NA
NA

Attributes by original data submitter

Sample

source_name
mammosphere-derived epithelial cells from #68 patient
patient
reduction mammoplasty patient #68
cell type
mammosphere-derived epithelial cells (MDECs)
protocol
DMSO-preexposed
chip antibody
RNA Polymerase II (Santa Cruz, sc-899X, 10 ng per IP)

Sequenced DNA Library

library_name
GSM529979: MDEC_DMSO-preexposed_rep2 [ChIP-seq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18336006
Reads aligned (%)
76.6
Duplicates removed (%)
4.8
Number of peaks
447 (qval < 1E-05)

hg19

Number of total reads
18336006
Reads aligned (%)
75.6
Duplicates removed (%)
6.1
Number of peaks
724 (qval < 1E-05)

Base call quality data from DBCLS SRA