SRX019775
GSM538012: PUER-H3K4me1-0h-ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
PUER
NA
NA

Attributes by original data submitter

Sample

source_name
PUER cells
cell type
PUER cells
chip antibody
H3K4me1 (ab8895)
treatment
none
transgenes
PU.1-ER
strain
C57BL/6
genotype/variation
PU.1-/-
chip antibody
H3K4me1 (Vendor: Abcam, cat# ab8895, lot# 721955)

Sequenced DNA Library

library_name
GSM538012: PUER-H3K4me1-0h-ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
10406883
Reads aligned (%)
86.3
Duplicates removed (%)
6.4
Number of peaks
8896 (qval < 1E-05)

mm9

Number of total reads
10406883
Reads aligned (%)
86.2
Duplicates removed (%)
6.6
Number of peaks
8913 (qval < 1E-05)

Base call quality data from DBCLS SRA