SRX019773
GSM537991: Bcell-H3K4me1-ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
resting splenic B cells
cell type
resting splenic B cells
chip antibody
H3K4me1 (ab8895)
treatment
none
transgenes
none
strain
C57BL/6
chip antibody
H3K4me1 (Vendor: Abcam, cat# ab8895, lot# 721955)

Sequenced DNA Library

library_name
GSM537991: Bcell-H3K4me1-ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
11840395
Reads aligned (%)
83.0
Duplicates removed (%)
6.2
Number of peaks
12600 (qval < 1E-05)

mm9

Number of total reads
11840395
Reads aligned (%)
82.9
Duplicates removed (%)
6.3
Number of peaks
12593 (qval < 1E-05)

Base call quality data from DBCLS SRA