SRX019719
ChIP-Seq analysis of H3K4me3 in human Mobilized CD34 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD34 Primary Cells
MARKERS
CD34+
DONOR_ID
RO 01508
DONOR_AGE
36
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
Hispanic
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000837

Sequenced DNA Library

library_name
Solexa-13497
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21378679
Reads aligned (%)
78.1
Duplicates removed (%)
37.0
Number of peaks
29160 (qval < 1E-05)

hg19

Number of total reads
21378679
Reads aligned (%)
77.4
Duplicates removed (%)
38.4
Number of peaks
28984 (qval < 1E-05)

Base call quality data from DBCLS SRA