SRX019379
GSM535757: 3T3L1 t3 H3K4me1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
3T3-L1
cell type
3T3-L1 adipocytes
chip epitope
H3K4me1
chip antibody
Abcam, Cat# ab8895, Lot# 268176

Sequenced DNA Library

library_name
GSM535757: 3T3L1_t3_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
13942512
Reads aligned (%)
70.2
Duplicates removed (%)
13.7
Number of peaks
223 (qval < 1E-05)

mm9

Number of total reads
13942512
Reads aligned (%)
70.1
Duplicates removed (%)
13.8
Number of peaks
218 (qval < 1E-05)

Base call quality data from DBCLS SRA