SRX019367
GSM535745: 3T3L1 t1 H3K27me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
3T3-L1
cell type
3T3-L1 pre-adipocytes
chip epitope
H3K27me3
chip antibody
Upstate, Cat# 07-449, Lot# DAM1387952

Sequenced DNA Library

library_name
GSM535745: 3T3L1_t1_H3K27me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
18261805
Reads aligned (%)
69.2
Duplicates removed (%)
9.4
Number of peaks
218 (qval < 1E-05)

mm9

Number of total reads
18261805
Reads aligned (%)
69.1
Duplicates removed (%)
9.5
Number of peaks
243 (qval < 1E-05)

Base call quality data from DBCLS SRA