SRX019365
GSM535743: 3T3L1 t1 H3K4me1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
3T3-L1
cell type
3T3-L1 pre-adipocytes
chip epitope
H3K4me1
chip antibody
Abcam, Cat# ab8895, Lot# 268176

Sequenced DNA Library

library_name
GSM535743: 3T3L1_t1_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16416407
Reads aligned (%)
69.0
Duplicates removed (%)
6.7
Number of peaks
1247 (qval < 1E-05)

mm9

Number of total reads
16416407
Reads aligned (%)
68.9
Duplicates removed (%)
6.9
Number of peaks
1238 (qval < 1E-05)

Base call quality data from DBCLS SRA