SRX019362
GSM535740: 3T3L1 WCE

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
3T3-L1, Whole Cell Extract (input control)
cell type
3T3-L1 pre-adipocytes and adipocytes
chip epitope
None
chip antibody
None

Sequenced DNA Library

library_name
GSM535740: 3T3L1_WCE
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
26567681
Reads aligned (%)
66.9
Duplicates removed (%)
18.1
Number of peaks
907 (qval < 1E-05)

mm9

Number of total reads
26567681
Reads aligned (%)
66.7
Duplicates removed (%)
18.1
Number of peaks
1229 (qval < 1E-05)

Base call quality data from DBCLS SRA