SRX018953
GSM531968: H3K9me2 PHF8 RNAi control ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Hela cells
cell line
HeLa cells
protocol
control

Sequenced DNA Library

library_name
GSM531968: H3K9me2_PHF8_RNAi_control_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15454634
Reads aligned (%)
81.9
Duplicates removed (%)
17.0
Number of peaks
92 (qval < 1E-05)

hg19

Number of total reads
15454634
Reads aligned (%)
81.2
Duplicates removed (%)
18.2
Number of peaks
257 (qval < 1E-05)

Base call quality data from DBCLS SRA