SRX018950
GSM531965: H3K9me1 PHF8 RNAi ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Hela cells
cell line
HeLa cells
protocol
PHF8 depletion

Sequenced DNA Library

library_name
GSM531965: H3K9me1_PHF8_RNAi_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14477696
Reads aligned (%)
94.1
Duplicates removed (%)
17.9
Number of peaks
74 (qval < 1E-05)

hg19

Number of total reads
14477696
Reads aligned (%)
93.6
Duplicates removed (%)
18.6
Number of peaks
68 (qval < 1E-05)

Base call quality data from DBCLS SRA