SRX018930
GSM531812: MEF H3K4me3 ChIP Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
Chromatin IP against H3K4me3
cell type
mouse embryonic fibroblasts (MEF)
transfection
n/a
passages
p3-5
antibody
anti-H3K4me3

Sequenced DNA Library

library_name
GSM531812: MEF_H3K4me3_ChIP_Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16146065
Reads aligned (%)
87.6
Duplicates removed (%)
9.4
Number of peaks
27437 (qval < 1E-05)

mm9

Number of total reads
16146065
Reads aligned (%)
87.5
Duplicates removed (%)
9.5
Number of peaks
27479 (qval < 1E-05)

Base call quality data from DBCLS SRA