Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TFAP2C

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
breast carcinoma cell line
cell type
breast carcinoma cell line
cell line
MCF-7
antibody
TFAP2C monoclonal antibody SC-12762X (Santa Cruz Biotechnology)

Sequenced DNA Library

library_name
GSM530915: TFAP2C
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
9932154
Reads aligned (%)
88.7
Duplicates removed (%)
5.9
Number of peaks
42963 (qval < 1E-05)

hg38

Number of total reads
9932154
Reads aligned (%)
89.3
Duplicates removed (%)
5.7
Number of peaks
42945 (qval < 1E-05)

Base call quality data from DBCLS SRA