SRX018799
GSM529413: H3K4me3 WIBR3 20% O2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC WIBR3
NA
NA

Attributes by original data submitter

Sample

source_name
hES line WIBR3 20% O2
cell line
hES cell line WIBR3
chip antibody
H3K4me3
oxygen concentration
20% O2

Sequenced DNA Library

library_name
GSM529413: H3K4me3 WIBR3 20% O2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19173663
Reads aligned (%)
70.5
Duplicates removed (%)
5.2
Number of peaks
30864 (qval < 1E-05)

hg19

Number of total reads
19173663
Reads aligned (%)
70.2
Duplicates removed (%)
5.8
Number of peaks
30865 (qval < 1E-05)

Base call quality data from DBCLS SRA