SRX018795
GSM529409: H3K4me3 WIBR2 5% O2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC WIBR2
NA
NA

Attributes by original data submitter

Sample

source_name
hES line WIBR2 5% O2
cell line
hES cell line WIBR2
chip antibody
H3K4me3
oxygen concentration
5% O2

Sequenced DNA Library

library_name
GSM529409: H3K4me3 WIBR2 5% O2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12793879
Reads aligned (%)
67.4
Duplicates removed (%)
5.6
Number of peaks
29942 (qval < 1E-05)

hg19

Number of total reads
12793879
Reads aligned (%)
67.2
Duplicates removed (%)
5.9
Number of peaks
29845 (qval < 1E-05)

Base call quality data from DBCLS SRA